Hundreds of resources at your fingertips

ELIXIR Italy offers integrated services to support life sciences research at every level, from high-throughput sequencing and advanced computing to training, data management, and bioinformatics tools.

available services

Pscan

Command-line tool

Scan protein sequence(s) with fingerprints from the PRINTS database.

Sequence sites, features and motifs

INGA

Web application, Web API

Interaction Network GO Annotator protein function predictor.

Function analysis

PredGPI

Web application

Prediction system for GPI-anchored proteins.

Protein properties+1

Plumed

Plug-in

PLUMED is a plugin that works with a large number of molecular dynamics codes…

Structural biology

IDP ontology

Ontology

Ontology used to describe disordered regions in intrinsically disordered…

Protein disordered structure

Protein Ensemble Database

Database portal, Web application, Web API

The Protein Ensemble Database (PED) is an open access database for the…

Protein disordered structure+1

Laniakea

Web service, Workbench

Laniakea is a complete software solution to set up a “Galaxy on-demand”…

DeepMito

Command-line tool, Web application

Predictor of protein sub-mitochondrial localization based on deep learning

Protein targeting and localisation

INPS-MD

Predicting the impact of mutations on protein stability from sequence and…

Genetic variationProtein folding+2

DeepSig

Command-line tool, Web application

Prediction of secretory signal peptides in protein sequences

Computational biology+3

Preview not available

UTRSite

Database portal

A collection of functional sequence patterns located in UTR sequences.

Molecular biologyTranscriptomics

Argot 2.5

Web application

Enhanced to quickly process thousands of sequences for functional inference.

Sequence analysis

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Argot 2.5

Web application

Enhanced to quickly process thousands of sequences for functional inference.

Sequence analysis

BENZ WS

Web application

Web Server annotating the Enzyme Commission numbers (EC numbers) of enzymes.

BiochemistryEnzymes+3

CONTIGuator

Command-line tool, Web application

A bacterial genomes finishing tool for structural insights on draft genomes.

Sequence analysis

MToolBox

Command-line tool

A highly automated bioinformatics pipeline to reconstruct and analyse human…

Sequence analysis

Orione

Workbench

Specialized domain server for integrative analysis of NGS microbial data, that…

BioinformaticsGenomics+1

PASTA

Command-line tool, Web application

A web server predictor for amyloid aggregation propensity from protein…

Protein interactions+1

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Tap into ELIXIR Italy’s powerful resources: from sequencing and compute to training and data management to accelerate your scientific journey.

15 jun

Next event EMBO Practical Course on Population Genomics: Background and tools

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