Hundreds of resources at your fingertips

ELIXIR Italy offers integrated services to support life sciences research at every level, from high-throughput sequencing and advanced computing to training, data management, and bioinformatics tools.

available services

GATK-LODn

Command-line tool

This method increases specificity and sensitivity of GATK results for mutation…

DNA mutation

RepeatsDB

Database portal, Web application, Web API

Database of annotated tandem repeat protein structures.

Protein structure analysis+1

ITSoneWB

ITSoneWB (ITSone WorkBench) is a Galaxy-based bioinformatic environment where…

Model organismsSequencingWorkflows

Pscan

Command-line tool

Scan protein sequence(s) with fingerprints from the PRINTS database.

Sequence sites, features and motifs

IDP ontology

Ontology

Ontology used to describe disordered regions in intrinsically disordered…

Protein disordered structure

Protein Ensemble Database

Database portal, Web application, Web API

The Protein Ensemble Database (PED) is an open access database for the…

Protein disordered structure+1

Laniakea

Web service, Workbench

Laniakea is a complete software solution to set up a “Galaxy on-demand”…

DeepMito

Command-line tool, Web application

Predictor of protein sub-mitochondrial localization based on deep learning

Protein targeting and localisation

INPS-MD

Predicting the impact of mutations on protein stability from sequence and…

Genetic variationProtein folding+2

DeepSig

Command-line tool, Web application

Prediction of secretory signal peptides in protein sequences

Computational biology+3

Preview not available

UTRSite

Database portal

A collection of functional sequence patterns located in UTR sequences.

Molecular biologyTranscriptomics

Argot 2.5

Web application

Enhanced to quickly process thousands of sequences for functional inference.

Sequence analysis

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ARIES

Workbench

Advanced Research Infrastructure for Experimentation in genomicS.

Infectious diseaseMetagenomics+3

ITSoneDB

Database portal

A comprehensive collection of the fungal ribosomal RNA Internal Transcribed…

Metagenomics

MICCA

Command-line tool

Software pipeline for the processing of amplicon sequencing data, from raw…

Data miningMetagenomicsPhylogeny

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Tap into ELIXIR Italy’s powerful resources: from sequencing and compute to training and data management to accelerate your scientific journey.

15 jun

Next event EMBO Practical Course on Population Genomics: Background and tools

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